RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g03860.1 View Network Show in Genome Browser |
| Other Names | Os05g0129300 |
| Description | CPuORF3 - conserved peptide uORF-containing transcript, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 1717707-1719158 Nucleotide Length: 447 |
| Protein-coding | LOC_Os05g03860 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Downstream Genes | LOC_Os09g39960 LOC_Os11g18044 LOC_Os11g47809 |
| Reference | |
|---|---|
| PubMed | 18065552 16051676 8341255 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g03860.1 |
| Rice Genome Annotation | LOC_Os05g03860.1 |
| Ricechip | LOC_Os05g03860.1 |
| KEGG | osa:4337699 dosa:Os05t0129300-02 |
| Entrez-Gene | 4337699 |