RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g03884.1 View Network Show in Genome Browser |
| Other Names | Os05g0129700 |
| Description | homeobox protein knotted-1-like 6, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 1724452-1730943 Nucleotide Length: 936 |
| Protein-coding | LOC_Os05g03884 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g03164 LOC_Os03g03260 LOC_Os03g47740 LOC_Os03g51050 LOC_Os03g12860 LOC_Os03g06930 LOC_Os03g52239 LOC_Os03g13240 LOC_Os02g08544 LOC_Os03g13250 LOC_Os01g04950 More.. |
| Downstream Genes | LOC_Os12g04440 LOC_Os11g04670 LOC_Os12g43950 LOC_Os10g39030 LOC_Os11g06020 LOC_Os06g01934 LOC_Os06g04850 LOC_Os08g19650 LOC_Os08g32080 LOC_Os06g04870 LOC_Os06g43860 More.. |
| Reference | |
|---|---|
| PubMed | 10080693 11536429 10753522 10488233 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g03884.1 |
| Rice Genome Annotation | LOC_Os05g03884.1 |
| Ricechip | LOC_Os05g03884.1 |
| KEGG | osa:4337701 dosa:Os05t0129700-01 |
| Entrez-Gene | 4337701 |