RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g03920.1 View Network Show in Genome Browser |
| Other Names | Os05g0130100 |
| Description | TKL_IRAK_DUF26-lf.3 - DUF26 kinases have homology to DUF26 containing loci, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 1752388-1755729 Nucleotide Length: 2007 |
| Protein-coding | LOC_Os05g03920 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0016301 | kinase activity | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g05630 LOC_Os02g15594 LOC_Os04g37904 LOC_Os04g56450 LOC_Os04g52000 LOC_Os02g55560 LOC_Os04g31270 LOC_Os03g18150 LOC_Os03g07300 LOC_Os01g49330 LOC_Os02g08364 More.. |
| Downstream Genes | LOC_Os07g32380 LOC_Os06g48300 LOC_Os06g33549 LOC_Os06g44210 LOC_Os06g33530 LOC_Os09g30100 LOC_Os10g39540 LOC_Os09g32810 LOC_Os05g50970 LOC_Os09g38550 LOC_Os11g13820 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR3980a-3p osa-miR3980b-3p |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g03920.1 |
| Rice Genome Annotation | LOC_Os05g03920.1 |
| Ricechip | LOC_Os05g03920.1 |
| KEGG | osa:4337704 dosa:Os05t0130100-00 |
| Entrez-Gene | 4337704 |