RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g04220.2 View Network Show in Genome Browser |
| Other Names | Os05g0133100 |
| Description | nitrogen regulatory protein P-II, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 1924066-1927242 Nucleotide Length: 495 |
| Protein-coding | LOC_Os05g04220 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006629 | lipid metabolic | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0019748 | secondary metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0030234 | enzyme regulator activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g46460 LOC_Os02g44000 LOC_Os04g56400 LOC_Os02g40730 LOC_Os03g12290 LOC_Os03g50490 LOC_Os02g50240 LOC_Os04g43070 LOC_Os02g40710 LOC_Os03g62200 LOC_Os01g65000 More.. |
| Downstream Genes | LOC_Os07g07260 LOC_Os09g30100 LOC_Os07g15330 LOC_Os09g14610 LOC_Os06g07550 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR528-3p |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g04220.2 |
| Rice Genome Annotation | LOC_Os05g04220.2 |
| Ricechip | LOC_Os05g04220.2 |
| KEGG | osa:4337720 dosa:Os05t0133100-01 |
| Entrez-Gene | 4337720 |