RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g04330.2 View Network Show in Genome Browser |
| Other Names | Os05g0133900 |
| Description | DNA methyltransferase protein, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 1965596-1973909 Nucleotide Length: 2004 |
| Protein-coding | LOC_Os05g04330 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0040029 | regulation of gene expression, epigenetic | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g40720 LOC_Os04g25550 LOC_Os01g36860 LOC_Os03g16369 LOC_Os04g02150 LOC_Os03g15590 LOC_Os02g49150 LOC_Os03g01970 LOC_Os04g42600 LOC_Os02g42550 LOC_Os01g27940 More.. |
| Downstream Genes | LOC_Os11g38900 LOC_Os08g25799 LOC_Os05g08600 LOC_Os09g29970 LOC_Os05g22260 LOC_Os08g37904 LOC_Os07g29360 LOC_Os12g19040 LOC_Os12g05090 LOC_Os09g33980 LOC_Os09g32450 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2925 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g04330.2 |
| Rice Genome Annotation | LOC_Os05g04330.2 |
| Ricechip | LOC_Os05g04330.2 |
| KEGG | osa:4337721 dosa:Os05t0133900-02 |
| Entrez-Gene | 4337721 |