RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g04340.1 View Network Show in Genome Browser |
| Other Names | Os05g0134000 |
| Description | CGMC_GSK.6 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 1974026-1977874 Nucleotide Length: 1236 |
| Protein-coding | LOC_Os05g04340 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009653 | anatomical structure morphogenesis | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0016301 | kinase activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g05630 LOC_Os04g37904 LOC_Os04g56450 LOC_Os02g55560 LOC_Os02g15594 LOC_Os04g52000 LOC_Os03g53720 LOC_Os02g35910 LOC_Os03g17700 LOC_Os03g21620 LOC_Os03g49730 More.. |
| Downstream Genes | LOC_Os06g33549 LOC_Os06g48300 LOC_Os07g32380 LOC_Os06g05660 LOC_Os06g33530 LOC_Os10g39540 LOC_Os05g43570 LOC_Os06g44210 LOC_Os12g41180 LOC_Os07g08000 LOC_Os05g46230 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1858a osa-miR1858b osa-miR2919 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g04340.1 |
| Rice Genome Annotation | LOC_Os05g04340.1 |
| Ricechip | LOC_Os05g04340.1 |
| KEGG | osa:4337722 dosa:Os05t0134000-03 |
| Entrez-Gene | 4337722 |