RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g04510.2 View Network Show in Genome Browser |
| Other Names | Os05g0135700 |
| Description | S-adenosylmethionine synthetase, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 2089056-2092066 Nucleotide Length: 1191 |
| Protein-coding | LOC_Os05g04510 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005618 | cell wall | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g01920 LOC_Os02g32490 LOC_Os04g17064 LOC_Os01g18860 LOC_Os03g12900 LOC_Os01g22010 LOC_Os03g08440 LOC_Os03g51600 LOC_Os03g08050 LOC_Os03g08020 LOC_Os03g08010 More.. |
| Downstream Genes | LOC_Os11g26850 LOC_Os08g12820 LOC_Os12g07300 LOC_Os07g42450 LOC_Os11g14220 LOC_Os06g37180 LOC_Os10g18220 LOC_Os12g25710 LOC_Os12g03720 LOC_Os11g11390 LOC_Os11g04070 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g04510.2 |
| Rice Genome Annotation | LOC_Os05g04510.2 |
| Ricechip | LOC_Os05g04510.2 |
| KEGG | osa:4337733 dosa:Os05t0135700-01 |
| Entrez-Gene | 4337733 |