RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g04610.1 View Network Show in Genome Browser |
| Other Names | Os05g0137200 |
| Description | ABC transporter, ATP-binding protein, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 2168980-2171510 Nucleotide Length: 1575 |
| Protein-coding | LOC_Os05g04610 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005215 | transporter activity | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g51380 LOC_Os02g05340 LOC_Os01g53600 LOC_Os01g67370 LOC_Os02g45650 LOC_Os01g44130 LOC_Os04g51820 LOC_Os02g07830 LOC_Os03g01270 LOC_Os02g13060 |
| Downstream Genes | LOC_Os07g01200 LOC_Os05g48750 LOC_Os06g48640 LOC_Os09g15750 LOC_Os08g25200 LOC_Os08g25010 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00240 rn01100 |
| Metacyc Pathways | PWY0-163 P1-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g04610.1 |
| Rice Genome Annotation | LOC_Os05g04610.1 |
| Ricechip | LOC_Os05g04610.1 |
| KEGG | osa:4337742 dosa:Os05t0137200-01 |
| Entrez-Gene | 4337742 |