RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g04820.1 View Network Show in Genome Browser |
| Other Names | Os05g0140100 |
| Description | MYB family transcription factor, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 2311396-2315444 Nucleotide Length: 1284 |
| Protein-coding | LOC_Os05g04820 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g47780 LOC_Os01g59150 LOC_Os03g45920 LOC_Os03g12250 LOC_Os04g42620 LOC_Os04g59330 LOC_Os03g64320 LOC_Os03g02240 LOC_Os01g50010 LOC_Os01g73980 LOC_Os05g01810 More.. |
| Downstream Genes | LOC_Os05g32110 LOC_Os10g02040 LOC_Os09g07350 LOC_Os10g22590 LOC_Os10g37240 LOC_Os11g30560 LOC_Os09g39410 LOC_Os06g06250 LOC_Os12g01560 LOC_Os11g01570 LOC_Os07g01370 More.. |
| Reference | |
|---|---|
| PubMed | 22395576 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g04820.1 |
| Rice Genome Annotation | LOC_Os05g04820.1 |
| Ricechip | LOC_Os05g04820.1 |
| KEGG | osa:4337756 dosa:Os05t0140100-01 |
| Entrez-Gene | 4337756 |