RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g04940.1 View Network Show in Genome Browser |
| Other Names | Os05g0141400 |
| Description | RNA methyltransferase, TrmH family protein, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 2378496-2381838 Nucleotide Length: 675 |
| Protein-coding | LOC_Os05g04940 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003723 | RNA binding | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g48050 LOC_Os03g01110 LOC_Os02g53420 LOC_Os01g73550 LOC_Os03g58050 LOC_Os04g28060 LOC_Os03g07840 LOC_Os03g49220 |
| Downstream Genes | LOC_Os08g39600 LOC_Os11g13420 LOC_Os05g25400 LOC_Os05g48930 LOC_Os08g39070 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5509 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g04940.1 |
| Rice Genome Annotation | LOC_Os05g04940.1 |
| Ricechip | LOC_Os05g04940.1 |
| KEGG | osa:4337763 dosa:Os05t0141400-01 |
| Entrez-Gene | 4337763 |