RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g05480.1 View Network Show in Genome Browser |
| Other Names | Os05g0147500 |
| Description | OsDegp6 - Putative Deg protease homologue, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 2725695-2733731 Nucleotide Length: 1791 |
| Protein-coding | LOC_Os05g05480 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006091 | generation of precursor metabolites and energy | Biological Process | IEA | |
| GO:0015979 | photosynthesis | Biological Process | IEA | |
| GO:0019538 | protein metabolic process | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0009579 | thylakoid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g55640 LOC_Os02g16709 LOC_Os04g43050 LOC_Os03g38740 LOC_Os01g68120 LOC_Os03g02970 LOC_Os02g33850 LOC_Os03g43430 LOC_Os01g37050 LOC_Os02g34810 |
| Downstream Genes | LOC_Os09g28000 LOC_Os06g05250 LOC_Os09g14610 LOC_Os08g10649 LOC_Os10g34430 LOC_Os06g25250 LOC_Os05g18850 LOC_Os05g49220 LOC_Os11g40500 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g05480.1 |
| Rice Genome Annotation | LOC_Os05g05480.1 |
| Ricechip | LOC_Os05g05480.1 |
| KEGG | osa:9270258 dosa:Os05t0147500-01 |
| Entrez-Gene | 9270258 |