RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g05680.1 View Network Show in Genome Browser |
| Other Names | Os05g0149400 |
| Description | 1-aminocyclopropane-1-carboxylate oxidase, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 2825323-2826992 Nucleotide Length: 927 |
| Protein-coding | LOC_Os05g05680 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g05670 LOC_Os02g56180 LOC_Os04g38390 |
| Downstream Genes | LOC_Os09g07450 LOC_Os06g06160 LOC_Os08g17600 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5809 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00270 rn01100 rn01110 |
| Metacyc Pathways | ETHYL-PWY |
| Reference | |
|---|---|
| PubMed | 17012402 21487048 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g05680.1 |
| Rice Genome Annotation | LOC_Os05g05680.1 |
| Ricechip | LOC_Os05g05680.1 |
| KEGG | osa:4337818 dosa:Os05t0149400-01 |
| Entrez-Gene | 4337818 |