RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g05720.2 View Network Show in Genome Browser |
| Other Names | Os05g0149900 |
| Description | tetratricopeptide repeat domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 2852845-2859273 Nucleotide Length: 1296 |
| Protein-coding | LOC_Os05g05720 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g40830 LOC_Os02g10020 LOC_Os01g32800 LOC_Os03g02680 LOC_Os03g11570 LOC_Os03g01850 LOC_Os02g03060 LOC_Os01g16650 LOC_Os02g53060 LOC_Os02g10640 LOC_Os04g36700 More.. |
| Downstream Genes | LOC_Os07g36420 LOC_Os11g28350 LOC_Os09g25310 LOC_Os06g06030 LOC_Os06g48640 LOC_Os06g04800 LOC_Os06g43570 LOC_Os06g07978 LOC_Os06g07878 LOC_Os06g07140 LOC_Os09g33986 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g05720.2 |
| Rice Genome Annotation | LOC_Os05g05720.2 |
| Ricechip | LOC_Os05g05720.2 |
| KEGG | osa:4337822 dosa:Os05t0149900-01 |
| Entrez-Gene | 4337822 |