RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g06300.1 View Network Show in Genome Browser |
| Other Names | Os05g0155000 |
| Description | 3-hydroxyacyl-CoA dehydrogenase, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 3219999-3228123 Nucleotide Length: 2175 |
| Protein-coding | LOC_Os05g06300 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006629 | lipid metabolic | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005618 | cell wall | Cellular Component | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005730 | nucleolus | Cellular Component | IEA | |
| GO:0005777 | peroxisome | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g57260 LOC_Os01g11710 LOC_Os01g63420 |
| Downstream Genes | LOC_Os06g06250 LOC_Os10g31950 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2864.1 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00280 rn01100 rn01110 |
| Metacyc Pathways | P3-PWY P127-PWY CENTFERM-PWY PWY-5177 ILEUDEG-PWY PWY-5136 FAO-PWY PWY-5138 VALDEG-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g06300.1 |
| Rice Genome Annotation | LOC_Os05g06300.1 |
| Ricechip | LOC_Os05g06300.1 |
| KEGG | osa:4337848 dosa:Os05t0155000-01 |
| Entrez-Gene | 4337848 |