RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g06490.1 View Network Show in Genome Browser |
| Other Names | Os05g0157100 |
| Description | RNA polymerase Rpb7, N-terminal domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 3342054-3344599 Nucleotide Length: 528 |
| Protein-coding | LOC_Os05g06490 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g22490 LOC_Os02g13530 LOC_Os03g07800 LOC_Os01g52490 |
| Downstream Genes | LOC_Os07g29420 LOC_Os05g46780 LOC_Os05g46770 LOC_Os05g06770 LOC_Os06g36160 LOC_Os12g41400 LOC_Os12g07740 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g06490.1 |
| Rice Genome Annotation | LOC_Os05g06490.1 |
| Ricechip | LOC_Os05g06490.1 |
| KEGG | osa:4337866 dosa:Os05t0157100-01 |
| Entrez-Gene | 4337866 |