RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g06840.1 View Network Show in Genome Browser |
| Other Names | Os05g0160800 |
| Description | POLE2A - Putative DNA polymerase epsilon complex subunit, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 3580569-3585735 Nucleotide Length: 969 |
| Protein-coding | LOC_Os05g06840 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g30800 LOC_Os02g53680 LOC_Os02g56130 LOC_Os03g03650 LOC_Os01g67250 LOC_Os01g48210 LOC_Os03g57870 LOC_Os01g63710 LOC_Os02g55410 LOC_Os04g42990 LOC_Os01g49010 More.. |
| Downstream Genes | LOC_Os05g19270 LOC_Os12g13950 LOC_Os11g03430 LOC_Os12g03130 LOC_Os09g24220 LOC_Os05g46270 LOC_Os11g29380 LOC_Os12g37400 LOC_Os10g34750 LOC_Os05g37980 LOC_Os05g29010 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00240 rn01100 rn00230 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g06840.1 |
| Rice Genome Annotation | LOC_Os05g06840.1 |
| Ricechip | LOC_Os05g06840.1 |
| KEGG | osa:4337886 dosa:Os05t0160800-01 |
| Entrez-Gene | 4337886 |