RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g07880.1 View Network Show in Genome Browser |
| Other Names | Os05g0171000 |
| Description | phospholipase D, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 4255763-4260333 Nucleotide Length: 2475 |
| Protein-coding | LOC_Os05g07880 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006629 | lipid metabolic | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g44060 LOC_Os02g41860 |
| Downstream Genes | LOC_Os07g26690 LOC_Os07g26630 LOC_Os05g26890 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5809 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00565 rn00564 rn01100 |
| Metacyc Pathways | PWY-3561 LIPASYN-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g07880.1 |
| Rice Genome Annotation | LOC_Os05g07880.1 |
| Ricechip | LOC_Os05g07880.1 |
| KEGG | osa:4337942 dosa:Os05t0171000-01 |
| Entrez-Gene | 4337942 |