RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g08100.1 View Network Show in Genome Browser |
| Other Names | Os05g0173700 |
| Description | DNA replication licensing factor MCM3 homolog 3, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 4413433-4414834 Nucleotide Length: 267 |
| Protein-coding | LOC_Os05g08100 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g58400 LOC_Os03g55150 LOC_Os01g48770 LOC_Os03g08280 LOC_Os03g10070 LOC_Os03g18410 LOC_Os03g09820 LOC_Os02g18550 LOC_Os02g04100 LOC_Os03g10340 LOC_Os03g21550 More.. |
| Downstream Genes | LOC_Os07g33300 LOC_Os09g02284 LOC_Os07g02210 LOC_Os11g29190 LOC_Os11g08940 LOC_Os07g47860 LOC_Os05g47480 LOC_Os12g21798 LOC_Os08g01130 LOC_Os10g29660 LOC_Os07g48300 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g08100.1 |
| Rice Genome Annotation | LOC_Os05g08100.1 |
| Ricechip | LOC_Os05g08100.1 |
| KEGG | osa:4337953 dosa:Os05t0173700-01 |
| Entrez-Gene | 4337953 |