RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g08370.1 View Network Show in Genome Browser |
| Other Names | Os05g0176100 |
| Description | CESA1 - cellulose synthase, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 4565177-4571461 Nucleotide Length: 3231 |
| Protein-coding | LOC_Os05g08370 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0005975 | carbohydrate metabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005794 | Golgi apparatus | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g12250 LOC_Os05g02310 LOC_Os02g41780 LOC_Os04g59330 LOC_Os02g02840 LOC_Os05g03174 LOC_Os01g02940 LOC_Os03g60350 LOC_Os03g44560 LOC_Os03g01710 LOC_Os04g41020 More.. |
| Downstream Genes | LOC_Os07g10770 LOC_Os05g32110 LOC_Os09g32080 LOC_Os09g36350 LOC_Os07g14850 LOC_Os08g06380 LOC_Os06g03640 LOC_Os08g35710 LOC_Os07g27810 LOC_Os08g17870 LOC_Os06g36050 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1855 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00500 |
| Metacyc Pathways | PWY-1001 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g08370.1 |
| Rice Genome Annotation | LOC_Os05g08370.1 |
| Ricechip | LOC_Os05g08370.1 |
| KEGG | osa:4337958 dosa:Os05t0176100-05 |
| Entrez-Gene | 4337958 |