RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g08540.1 View Network Show in Genome Browser |
| Other Names | Os05g0178100 |
| Description | gibberellin 3-beta-dioxygenase 2-2, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 4660662-4662589 Nucleotide Length: 1155 |
| Protein-coding | LOC_Os05g08540 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006629 | lipid metabolic | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0007165 | signal transduction | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g48630 |
| Downstream Genes | LOC_Os09g07450 LOC_Os11g06040 |
| Pathways | |
|---|---|
| KEGG Pathways | rn01110 rn00904 rn01100 |
| Metacyc Pathways | PWY-5035 |
| Reference | |
|---|---|
| PubMed | 11438692 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g08540.1 |
| Rice Genome Annotation | LOC_Os05g08540.1 |
| Ricechip | LOC_Os05g08540.1 |
| KEGG | osa:4337968 dosa:Os05t0178100-01 |
| Entrez-Gene | 4337968 |