RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g08600.1 View Network Show in Genome Browser |
| Other Names | Os05g0178900 |
| Description | splicing factor, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 4704643-4708657 Nucleotide Length: 1305 |
| Protein-coding | LOC_Os05g08600 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g18010 LOC_Os03g16369 LOC_Os04g25550 LOC_Os05g04330 LOC_Os01g36860 LOC_Os03g51220 LOC_Os03g11200 LOC_Os03g39129 LOC_Os04g14510 |
| Downstream Genes | LOC_Os10g02630 LOC_Os08g25799 LOC_Os11g38900 LOC_Os05g11770 LOC_Os11g19130 LOC_Os08g37904 LOC_Os06g14470 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g08600.1 |
| Rice Genome Annotation | LOC_Os05g08600.1 |
| Ricechip | LOC_Os05g08600.1 |
| KEGG | osa:4337972 dosa:Os05t0178900-02 |
| Entrez-Gene | 4337972 |