RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g08950.1 View Network Show in Genome Browser |
| Other Names | Os05g0182201 |
| Description | phosphoribosyl transferase, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 4947678-4951874 Nucleotide Length: 786 |
| Protein-coding | LOC_Os05g08950 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g42520 LOC_Os01g72240 LOC_Os01g65260 LOC_Os02g03540 LOC_Os02g48390 LOC_Os02g52940 LOC_Os01g62500 LOC_Os01g72250 LOC_Os02g40010 LOC_Os03g56310 LOC_Os02g43350 More.. |
| Downstream Genes | LOC_Os07g30150 LOC_Os05g35580 LOC_Os12g39860 LOC_Os12g28460 LOC_Os05g38170 LOC_Os09g26260 LOC_Os12g24320 LOC_Os11g16370 LOC_Os12g44220 LOC_Os07g09470 LOC_Os06g45820 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2098-3p |
| Pathways | |
|---|---|
| KEGG Pathways | rn00230 rn01100 |
| Metacyc Pathways | P1-PWY PWY-5043 P121-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g08950.1 |
| Rice Genome Annotation | LOC_Os05g08950.1 |
| Ricechip | LOC_Os05g08950.1 |
| KEGG | dosa:Os05t0182201-01 |