RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g08960.1 View Network Show in Genome Browser |
| Other Names | Os05g0182500 |
| Description | ubiquitin-conjugating enzyme, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 4958259-4964959 Nucleotide Length: 459 |
| Protein-coding | LOC_Os05g08960 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0019538 | protein metabolic process | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g46450 LOC_Os01g48280 LOC_Os03g26960 LOC_Os01g46926 LOC_Os03g60550 LOC_Os01g70140 LOC_Os04g57220 LOC_Os01g60410 LOC_Os01g60360 LOC_Os02g16040 LOC_Os03g03130 More.. |
| Downstream Genes | LOC_Os08g06070 LOC_Os08g28680 LOC_Os09g15320 LOC_Os11g32900 LOC_Os10g11260 LOC_Os06g46770 LOC_Os10g34380 LOC_Os06g30970 LOC_Os10g39120 LOC_Os12g06200 LOC_Os06g06030 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g08960.1 |
| Rice Genome Annotation | LOC_Os05g08960.1 |
| Ricechip | LOC_Os05g08960.1 |
| KEGG | osa:4337993 dosa:Os05t0182500-02 |
| Entrez-Gene | 4337993 |