RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g08970.1 View Network Show in Genome Browser |
| Other Names | Os05g0182600 |
| Description | SSRP1-like FACT complex subunit, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 4965425-4971029 Nucleotide Length: 1923 |
| Protein-coding | LOC_Os05g08970 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005654 | nucleoplasm | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g25550 LOC_Os01g70140 LOC_Os03g63430 LOC_Os04g49420 LOC_Os03g02780 LOC_Os02g45940 LOC_Os01g61920 LOC_Os01g32800 LOC_Os03g11570 LOC_Os03g10940 LOC_Os03g08280 More.. |
| Downstream Genes | LOC_Os08g06070 LOC_Os07g02350 LOC_Os10g39410 LOC_Os09g38020 LOC_Os09g26340 LOC_Os07g36500 LOC_Os05g39050 LOC_Os05g38740 LOC_Os08g31240 LOC_Os07g29360 LOC_Os10g41520 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g08970.1 |
| Rice Genome Annotation | LOC_Os05g08970.1 |
| Ricechip | LOC_Os05g08970.1 |
| KEGG | osa:4337994 dosa:Os05t0182600-01 |
| Entrez-Gene | 4337994 |