RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g08990.1 View Network Show in Genome Browser |
| Other Names | Os05g0182800 |
| Description | glutaminyl-tRNA synthetase, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 4976710-4981862 Nucleotide Length: 2391 |
| Protein-coding | LOC_Os05g08990 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009908 | flower development | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g38980 LOC_Os05g07030 LOC_Os03g40110 LOC_Os01g06510 LOC_Os01g42710 LOC_Os01g41030 LOC_Os01g59990 LOC_Os04g46310 LOC_Os03g19280 LOC_Os04g50990 LOC_Os04g42010 More.. |
| Downstream Genes | LOC_Os10g22380 LOC_Os09g31180 LOC_Os10g41960 LOC_Os09g30412 LOC_Os09g30418 LOC_Os07g38760 LOC_Os08g39140 LOC_Os10g10434 LOC_Os08g37780 LOC_Os10g26050 LOC_Os07g40930 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00970 rn01100 |
| Metacyc Pathways | TRNA-CHARGING-PWY PWY-5188 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g08990.1 |
| Rice Genome Annotation | LOC_Os05g08990.1 |
| Ricechip | LOC_Os05g08990.1 |
| KEGG | osa:4337996 dosa:Os05t0182800-01 |
| Entrez-Gene | 4337996 |