RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g09400.1 View Network Show in Genome Browser |
| Other Names | Os05g0186000 |
| Description | 30S ribosomal protein S31, chloroplast precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 5274199-5277765 Nucleotide Length: 417 |
| Protein-coding | LOC_Os05g09400 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0005198 | structural molecule activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0005840 | ribosome | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g48690 LOC_Os05g01110 LOC_Os01g59060 LOC_Os01g54540 LOC_Os03g03020 LOC_Os03g10060 LOC_Os04g50110 LOC_Os02g43600 LOC_Os04g44440 LOC_Os02g42380 LOC_Os03g18020 More.. |
| Downstream Genes | LOC_Os09g10760 LOC_Os06g43900 LOC_Os05g27100 LOC_Os07g04160 LOC_Os09g24530 LOC_Os06g21530 LOC_Os06g46930 LOC_Os06g09610 LOC_Os08g25900 LOC_Os06g45340 LOC_Os12g35330 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g09400.1 |
| Rice Genome Annotation | LOC_Os05g09400.1 |
| Ricechip | LOC_Os05g09400.1 |
| KEGG | osa:4338005 dosa:Os05t0186000-02 |
| Entrez-Gene | 4338005 |