RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g09620.2 View Network Show in Genome Browser |
| Other Names | Os05g0188500 |
| Description | SCC3, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 5426189-5433090 Nucleotide Length: 2937 |
| Protein-coding | LOC_Os05g09620 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0007049 | cell cycle | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g67250 LOC_Os02g04050 LOC_Os02g04080 LOC_Os01g68810 LOC_Os03g18580 LOC_Os03g18570 LOC_Os03g40010 LOC_Os01g64900 LOC_Os03g46390 LOC_Os03g11200 LOC_Os05g06470 More.. |
| Downstream Genes | LOC_Os12g44390 LOC_Os06g17840 LOC_Os06g10690 LOC_Os11g40150 LOC_Os12g31370 LOC_Os06g23440 LOC_Os10g41030 LOC_Os11g16540 LOC_Os05g27940 LOC_Os12g43550 LOC_Os10g42950 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g09620.2 |
| Rice Genome Annotation | LOC_Os05g09620.2 |
| Ricechip | LOC_Os05g09620.2 |
| KEGG | osa:4338016 dosa:Os05t0188500-02 |
| Entrez-Gene | 4338016 |