RiceNetDB

RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.

General Information
Locus Name	LOC_Os05g10670.1 View Network Show in Genome Browser
Other Names	Os05g0195200,Os05g0195101
Description	zinc finger CCCH type family protein, putative, expressed
Gene Attributes	Chromosome: Chr5 CDS Coordinates (5'-3'): 5846045-5848291 Nucleotide Length: 1395
Protein-coding	LOC_Os05g10670

Gene Ontology Classification
GO	Name	Type	Code
GO:0009058	biosynthetic process	Biological Process	IEA
GO:0009058	biosynthetic process	Biological Process	IEA
GO:0006139	nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	Biological Process	IEA
GO:0006139	nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	Biological Process	IEA
GO:0006950	response to stress	Biological Process	IEA
GO:0006950	response to stress	Biological Process	IEA
GO:0003676	nucleic acid binding	Molecular Function	IEA
GO:0003676	nucleic acid binding	Molecular Function	IEA
GO:0003700	sequence-specific DNA binding transcription factor activity	Molecular Function	IEA
GO:0003700	sequence-specific DNA binding transcription factor activity	Molecular Function	IEA
GO:0005886	plasma membrane	Cellular Component	IEA
GO:0005886	plasma membrane	Cellular Component	IEA

Regulatory Genes ( Show Network In Viewer )
Upstream Genes	LOC_Os01g43680 LOC_Os02g01720 LOC_Os02g27030 LOC_Os03g41080 LOC_Os03g31490 LOC_Os03g08860
Downstream Genes	LOC_Os08g13320 LOC_Os10g32680 LOC_Os09g39560 LOC_Os09g17620 LOC_Os12g32970

Reference
PubMed	23296688 22572927

Database Links
Gramene	LOC_Os05g10670.1
Rice Genome Annotation	LOC_Os05g10670.1
Ricechip	LOC_Os05g10670.1
KEGG	osa:4338037 dosa:Os05t0195200-01
Entrez-Gene	4338037