RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g10770.1 View Network Show in Genome Browser |
| Other Names | Os05g0196500 |
| Description | transcription factor jumonji, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 5940137-5946866 Nucleotide Length: 3717 |
| Protein-coding | LOC_Os05g10770 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g09920 LOC_Os01g36630 LOC_Os03g31594 LOC_Os03g22540 LOC_Os03g27250 LOC_Os02g58210 LOC_Os01g56640 LOC_Os02g01940 LOC_Os01g56140 |
| Downstream Genes | LOC_Os11g36450 LOC_Os09g31380 LOC_Os09g31050 LOC_Os09g22540 LOC_Os09g22040 LOC_Os07g45064 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2120 |
| Reference | |
|---|---|
| PubMed | 23319643 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g10770.1 |
| Rice Genome Annotation | LOC_Os05g10770.1 |
| Ricechip | LOC_Os05g10770.1 |
| KEGG | osa:4338043 dosa:Os05t0196500-01 |
| Entrez-Gene | 4338043 |