RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g10980.1 View Network Show in Genome Browser |
| Other Names | Os05g0198700 |
| Description | REX1 DNA Repair family protein, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 6133737-6136477 Nucleotide Length: 498 |
| Protein-coding | LOC_Os05g10980 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0005623 | cell | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g49680 LOC_Os04g42990 LOC_Os04g58350 LOC_Os02g03340 LOC_Os05g05260 LOC_Os03g52750 LOC_Os02g07160 |
| Downstream Genes | LOC_Os05g32600 LOC_Os10g41400 LOC_Os08g25060 LOC_Os11g28350 LOC_Os06g07480 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g10980.1 |
| Rice Genome Annotation | LOC_Os05g10980.1 |
| Ricechip | LOC_Os05g10980.1 |
| KEGG | osa:4338052 dosa:Os05t0198700-01 |
| Entrez-Gene | 4338052 |