RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g12190.1 View Network Show in Genome Browser |
| Other Names | Os05g0212600 |
| Description | chalcone synthase, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 6982114-6983529 Nucleotide Length: 939 |
| Protein-coding | LOC_Os05g12190 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0019748 | secondary metabolic process | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005783 | endoplasmic reticulum | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g18590 LOC_Os04g30760 LOC_Os02g30060 LOC_Os03g22950 LOC_Os03g39860 LOC_Os03g63930 LOC_Os04g36800 LOC_Os02g10320 |
| Downstream Genes | LOC_Os12g13930 LOC_Os05g31290 LOC_Os08g43580 LOC_Os11g31900 LOC_Os09g36860 LOC_Os06g09630 LOC_Os07g12150 LOC_Os07g42420 LOC_Os12g34890 LOC_Os07g30790 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g12190.1 |
| Rice Genome Annotation | LOC_Os05g12190.1 |
| Ricechip | LOC_Os05g12190.1 |
| KEGG | dosa:Os05t0212600-00 |