RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g13300.1 View Network Show in Genome Browser |
| Other Names | Os05g0219800 |
| Description | helicase, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 7367166-7374483 Nucleotide Length: 1791 |
| Protein-coding | LOC_Os05g13300 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0003676 | nucleic acid binding | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g15810 LOC_Os02g50370 LOC_Os02g19860 LOC_Os01g11370 LOC_Os04g35420 LOC_Os04g40940 LOC_Os04g53760 LOC_Os01g08310 LOC_Os01g43540 LOC_Os03g26440 LOC_Os04g54940 More.. |
| Downstream Genes | LOC_Os11g16540 LOC_Os12g07050 LOC_Os10g29560 LOC_Os09g06560 LOC_Os11g26910 LOC_Os11g29380 LOC_Os11g20554 LOC_Os08g24760 LOC_Os05g46570 LOC_Os07g42900 LOC_Os07g32480 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g13300.1 |
| Rice Genome Annotation | LOC_Os05g13300.1 |
| Ricechip | LOC_Os05g13300.1 |
| KEGG | osa:9272109 dosa:Os05t0219800-01 |
| Entrez-Gene | 9272109 |