RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g13620.1 View Network Show in Genome Browser |
| Other Names | Os05g0223200 |
| Description | RNA recognition motif containing protein, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 7552496-7553896 Nucleotide Length: 315 |
| Protein-coding | LOC_Os05g13620 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0003723 | RNA binding | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| GO:0005777 | peroxisome | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g04780 LOC_Os02g48340 LOC_Os02g52140 LOC_Os04g53440 LOC_Os03g24890 LOC_Os05g04850 LOC_Os02g39890 LOC_Os04g45930 LOC_Os02g03040 LOC_Os03g17010 |
| Downstream Genes | LOC_Os05g13630 LOC_Os06g20010 LOC_Os08g09100 LOC_Os12g01010 LOC_Os05g23800 LOC_Os11g01020 LOC_Os09g20780 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g13620.1 |
| Rice Genome Annotation | LOC_Os05g13620.1 |
| Ricechip | LOC_Os05g13620.1 |
| KEGG | osa:4338137 dosa:Os05t0223200-01 |
| Entrez-Gene | 4338137 |