RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g14180.1 View Network Show in Genome Browser |
| Other Names | Os05g0230700 |
| Description | OsIAA17 - Auxin-responsive Aux/IAA gene family member, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 7950872-7954386 Nucleotide Length: 774 |
| Protein-coding | LOC_Os05g14180 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0007165 | signal transduction | Biological Process | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g50290 LOC_Os02g21250 LOC_Os01g48420 LOC_Os01g55780 LOC_Os03g59740 LOC_Os01g59440 LOC_Os02g47440 |
| Downstream Genes | LOC_Os05g48020 LOC_Os07g12200 LOC_Os07g12170 LOC_Os05g38630 LOC_Os06g05880 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g14180.1 |
| Rice Genome Annotation | LOC_Os05g14180.1 |
| Ricechip | LOC_Os05g14180.1 |
| KEGG | osa:4338160 dosa:Os05t0230700-01 |
| Entrez-Gene | 4338160 |