RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g16630.2 View Network Show in Genome Browser |
| Other Names | Os05g0255600 |
| Description | thioredoxin domain-containing protein 9, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 9432375-9436136 Nucleotide Length: 354 |
| Protein-coding | LOC_Os05g16630 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0016049 | cell growth | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g46650 LOC_Os02g34940 LOC_Os04g35600 LOC_Os03g51600 LOC_Os03g43020 LOC_Os02g14860 LOC_Os04g54940 LOC_Os03g11970 LOC_Os02g05310 |
| Downstream Genes | LOC_Os12g37590 LOC_Os11g09280 LOC_Os09g27830 LOC_Os10g35720 LOC_Os10g34520 LOC_Os07g10256 LOC_Os11g42160 LOC_Os11g14220 LOC_Os10g34670 LOC_Os07g38730 LOC_Os06g48310 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR414 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g16630.2 |
| Rice Genome Annotation | LOC_Os05g16630.2 |
| Ricechip | LOC_Os05g16630.2 |
| KEGG | osa:4338227 dosa:Os05t0255600-01 |
| Entrez-Gene | 4338227 |