RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g18850.1 View Network Show in Genome Browser |
| Other Names | Os05g0271300 |
| Description | endoribonuclease Dicer, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 10945615-10947989 Nucleotide Length: 954 |
| Protein-coding | LOC_Os05g18850 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0004518 | nuclease activity | Molecular Function | IEA | |
| GO:0003723 | RNA binding | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g55640 LOC_Os02g16709 LOC_Os03g63740 LOC_Os01g59510 LOC_Os01g56520 LOC_Os02g42600 LOC_Os01g63820 LOC_Os03g53760 LOC_Os02g04050 LOC_Os01g67740 LOC_Os02g04080 More.. |
| Downstream Genes | LOC_Os08g10649 LOC_Os09g28000 LOC_Os05g49220 LOC_Os11g40500 LOC_Os09g33460 LOC_Os05g25400 LOC_Os05g24160 LOC_Os12g01916 LOC_Os09g24954 LOC_Os10g33970 LOC_Os12g44390 More.. |
| Reference | |
|---|---|
| PubMed | 18826656 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g18850.1 |
| Rice Genome Annotation | LOC_Os05g18850.1 |
| Ricechip | LOC_Os05g18850.1 |
| KEGG | osa:4338262 dosa:Os05t0271300-00 |
| Entrez-Gene | 4338262 |