RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g19040.1 View Network Show in Genome Browser |
| Other Names | Os05g0272900 |
| Description | prefoldin, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 11049078-11052426 Nucleotide Length: 666 |
| Protein-coding | LOC_Os05g19040 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| GO:0005623 | cell | Cellular Component | IEA | |
| GO:0005783 | endoplasmic reticulum | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g32950 LOC_Os01g73310 LOC_Os05g01600 LOC_Os03g61970 LOC_Os03g63110 LOC_Os02g21650 LOC_Os04g20280 LOC_Os01g05694 LOC_Os01g70180 LOC_Os01g64630 LOC_Os01g05744 More.. |
| Downstream Genes | LOC_Os06g02570 LOC_Os11g06390 LOC_Os10g36650 LOC_Os05g36290 LOC_Os07g19070 LOC_Os06g26270 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1858a osa-miR1858b |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g19040.1 |
| Rice Genome Annotation | LOC_Os05g19040.1 |
| Ricechip | LOC_Os05g19040.1 |
| KEGG | osa:4338268 dosa:Os05t0272900-01 |
| Entrez-Gene | 4338268 |