RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g19954.1 View Network Show in Genome Browser |
| Other Names | Os05g0279300 |
| Description | tRNA pseudouridine synthase family protein, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 11647790-11656591 Nucleotide Length: 1029 |
| Protein-coding | LOC_Os05g19954 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g54890 LOC_Os03g60100 LOC_Os02g16630 LOC_Os03g59720 LOC_Os01g54540 LOC_Os05g15360 LOC_Os03g55930 LOC_Os03g49710 LOC_Os03g12020 LOC_Os03g04590 LOC_Os02g56960 More.. |
| Downstream Genes | LOC_Os06g39700 LOC_Os09g07910 LOC_Os05g33230 LOC_Os10g32920 LOC_Os08g04180 LOC_Os07g43170 LOC_Os07g01870 LOC_Os09g19952 LOC_Os05g38580 LOC_Os07g08430 LOC_Os07g46440 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g19954.1 |
| Rice Genome Annotation | LOC_Os05g19954.1 |
| Ricechip | LOC_Os05g19954.1 |
| KEGG | osa:9267107 dosa:Os05t0279300-01 |
| Entrez-Gene | 9267107 |