RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g22260.1 View Network Show in Genome Browser |
| Other Names | Os05g0289400 |
| Description | crooked neck, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 12601125-12606132 Nucleotide Length: 2172 |
| Protein-coding | LOC_Os05g22260 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g28090 LOC_Os03g21990 LOC_Os02g52250 LOC_Os02g04480 LOC_Os03g27970 LOC_Os05g07050 LOC_Os02g39050 LOC_Os03g50850 LOC_Os02g14780 LOC_Os02g05310 LOC_Os02g01740 More.. |
| Downstream Genes | LOC_Os07g44970 LOC_Os12g15420 LOC_Os06g12910 LOC_Os10g34380 LOC_Os12g42140 LOC_Os06g11420 LOC_Os09g02700 LOC_Os05g37390 LOC_Os12g05410 LOC_Os08g22354 LOC_Os11g05394 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5075 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g22260.1 |
| Rice Genome Annotation | LOC_Os05g22260.1 |
| Ricechip | LOC_Os05g22260.1 |
| KEGG | osa:4338298 dosa:Os05t0289400-01 |
| Entrez-Gene | 4338298 |