RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g22830.1 View Network Show in Genome Browser |
| Other Names | Os05g0293600 |
| Description | DNA-directed RNA polymerase subunit beta, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 12959279-12960315 Nucleotide Length: 1722 |
| Protein-coding | LOC_Os05g22830 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g24614 LOC_Os01g47330 LOC_Os03g52400 LOC_Os04g16830 LOC_Os02g05880 LOC_Os01g73430 LOC_Os03g17580 LOC_Os01g64090 LOC_Os02g21660 LOC_Os03g61030 LOC_Os05g05860 More.. |
| Downstream Genes | LOC_Os05g49320 LOC_Os05g48050 LOC_Os06g35470 LOC_Os07g43310 LOC_Os08g44450 LOC_Os12g01710 LOC_Os08g44380 LOC_Os05g32220 LOC_Os10g32870 LOC_Os06g40950 LOC_Os11g29190 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00230 rn01100 rn00240 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g22830.1 |
| Rice Genome Annotation | LOC_Os05g22830.1 |
| Ricechip | LOC_Os05g22830.1 |
| KEGG | dosa:Os05t0293600-01 |