RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g23240.1 View Network Show in Genome Browser |
| Other Names | Os05g0297400 |
| Description | CAX-interacting protein 4, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 13269605-13277175 Nucleotide Length: 894 |
| Protein-coding | LOC_Os05g23240 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003676 | nucleic acid binding | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g37690 LOC_Os02g40460 LOC_Os02g39720 LOC_Os02g05660 LOC_Os02g02970 LOC_Os02g54770 LOC_Os03g60600 LOC_Os03g17710 LOC_Os05g02880 LOC_Os05g07000 LOC_Os03g45730 More.. |
| Downstream Genes | LOC_Os05g51610 LOC_Os10g39820 LOC_Os10g29560 LOC_Os06g46400 LOC_Os09g37720 LOC_Os08g01070 LOC_Os10g11034 LOC_Os06g08840 LOC_Os06g48210 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g23240.1 |
| Rice Genome Annotation | LOC_Os05g23240.1 |
| Ricechip | LOC_Os05g23240.1 |
| KEGG | dosa:Os05t0297400-00 |