RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g23620.1 View Network Show in Genome Browser |
| Other Names | Os05g0301700 |
| Description | cytochrome c1-1, heme protein, mitochondrial precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 13542982-13547500 Nucleotide Length: 915 |
| Protein-coding | LOC_Os05g23620 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g32120 LOC_Os04g32660 LOC_Os02g01920 LOC_Os03g56280 LOC_Os01g49190 LOC_Os01g52214 LOC_Os03g09250 LOC_Os01g42650 LOC_Os03g56300 LOC_Os04g24520 LOC_Os04g10400 More.. |
| Downstream Genes | LOC_Os12g43630 LOC_Os05g34770 LOC_Os12g10604 LOC_Os07g37030 LOC_Os11g26850 LOC_Os12g43670 LOC_Os05g45730 LOC_Os05g47980 LOC_Os05g44210 LOC_Os06g46372 LOC_Os07g04240 More.. |
| Pathways | |
|---|---|
| Metacyc Pathways | PWY-3781 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g23620.1 |
| Rice Genome Annotation | LOC_Os05g23620.1 |
| Ricechip | LOC_Os05g23620.1 |
| KEGG | osa:4338350 dosa:Os05t0301700-01 |
| Entrez-Gene | 4338350 |