RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g23880.1 View Network Show in Genome Browser |
| Other Names | Os05g0304600 |
| Description | lipoxygenase, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 13734067-13740568 Nucleotide Length: 2544 |
| Protein-coding | LOC_Os05g23880 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g21620 LOC_Os05g01360 LOC_Os01g73310 LOC_Os05g01600 LOC_Os03g61970 LOC_Os04g56740 LOC_Os03g06350 |
| Downstream Genes | LOC_Os07g48290 LOC_Os09g15760 LOC_Os11g06390 LOC_Os10g36650 LOC_Os05g36290 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00592 rn01100 rn00591 |
| Metacyc Pathways | PWY-735 PWY-5410 PWY-5409 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g23880.1 |
| Rice Genome Annotation | LOC_Os05g23880.1 |
| Ricechip | LOC_Os05g23880.1 |
| KEGG | osa:4338358 dosa:Os05t0304600-01 |
| Entrez-Gene | 4338358 |