RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g23940.1 View Network Show in Genome Browser |
| Other Names | Os05g0305100 |
| Description | transcription initiation factor IIB, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 13772258-13781932 Nucleotide Length: 1725 |
| Protein-coding | LOC_Os05g23940 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0008135 | translation factor activity, nucleic acid binding | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g45410 LOC_Os03g52750 LOC_Os01g34430 LOC_Os04g41490 LOC_Os03g28960 LOC_Os01g59140 LOC_Os03g38960 LOC_Os04g56730 LOC_Os04g32350 LOC_Os01g34614 LOC_Os01g27940 More.. |
| Downstream Genes | LOC_Os12g39070 LOC_Os11g16540 LOC_Os09g36440 LOC_Os10g29660 LOC_Os09g32680 LOC_Os06g40110 LOC_Os11g08940 LOC_Os07g29420 LOC_Os08g16780 LOC_Os06g48230 LOC_Os08g42600 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g23940.1 |
| Rice Genome Annotation | LOC_Os05g23940.1 |
| Ricechip | LOC_Os05g23940.1 |
| KEGG | osa:4338362 dosa:Os05t0305100-01 |
| Entrez-Gene | 4338362 |