RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g24601.3 View Network Show in Genome Browser |
| Other Names | Os05g0311000 |
| Description | coatomer subunit delta, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 14191541-14197391 Nucleotide Length: 1356 |
| Protein-coding | LOC_Os05g24601 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g11830 LOC_Os01g17430 LOC_Os03g50350 LOC_Os03g50340 LOC_Os03g12590 LOC_Os02g46510 LOC_Os01g50770 LOC_Os02g11840 LOC_Os02g21250 LOC_Os03g57100 LOC_Os05g23600 More.. |
| Downstream Genes | LOC_Os11g07280 LOC_Os07g10150 LOC_Os09g04110 LOC_Os06g05180 LOC_Os05g38610 LOC_Os05g31780 LOC_Os07g42810 LOC_Os05g46550 LOC_Os11g37480 LOC_Os07g12200 LOC_Os07g12170 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR812v |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g24601.3 |
| Rice Genome Annotation | LOC_Os05g24601.3 |
| Ricechip | LOC_Os05g24601.3 |
| KEGG | osa:4338376 dosa:Os05t0311000-01 |
| Entrez-Gene | 4338376 |