RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g25850.2 View Network Show in Genome Browser |
| Other Names | Os05g0323900 |
| Description | superoxide dismutase, mitochondrial precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 15046730-15051515 Nucleotide Length: 588 |
| Protein-coding | LOC_Os05g25850 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0009790 | embryo development | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0009607 | response to biotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g22810 LOC_Os03g03910 LOC_Os03g17310 LOC_Os02g02400 LOC_Os01g44130 LOC_Os03g11960 LOC_Os01g54370 LOC_Os02g58030 LOC_Os05g25310 LOC_Os02g21460 LOC_Os03g25050 More.. |
| Downstream Genes | LOC_Os08g44770 LOC_Os08g40260 LOC_Os07g46990 LOC_Os06g51150 LOC_Os07g29620 LOC_Os05g44340 LOC_Os08g02690 LOC_Os11g40510 LOC_Os06g04600 LOC_Os07g14070 LOC_Os07g14030 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g25850.2 |
| Rice Genome Annotation | LOC_Os05g25850.2 |
| Ricechip | LOC_Os05g25850.2 |
| KEGG | osa:4338417 dosa:Os05t0323900-01 |
| Entrez-Gene | 4338417 |