RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g27320.2 View Network Show in Genome Browser |
| Other Names | Os05g0339000 |
| Description | VHS and GAT domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 15872875-15880426 Nucleotide Length: 1845 |
| Protein-coding | LOC_Os05g27320 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0005215 | transporter activity | Molecular Function | IEA | |
| GO:0005794 | Golgi apparatus | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g12880 LOC_Os01g13160 LOC_Os02g41550 LOC_Os02g56110 LOC_Os02g19170 LOC_Os04g51120 LOC_Os02g48840 LOC_Os02g32660 LOC_Os03g23950 LOC_Os02g52860 LOC_Os05g25310 More.. |
| Downstream Genes | LOC_Os06g07090 LOC_Os07g03160 LOC_Os08g08830 LOC_Os07g30300 LOC_Os06g02620 LOC_Os08g20270 LOC_Os05g44340 LOC_Os07g44660 LOC_Os07g05570 LOC_Os09g30150 LOC_Os06g18830 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g27320.2 |
| Rice Genome Annotation | LOC_Os05g27320.2 |
| Ricechip | LOC_Os05g27320.2 |
| KEGG | osa:4338463 dosa:Os05t0339000-01 |
| Entrez-Gene | 4338463 |