RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g27730.1 View Network Show in Genome Browser |
| Other Names | Os05g0343400 |
| Description | WRKY53, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 16150266-16152747 Nucleotide Length: 1464 |
| Protein-coding | LOC_Os05g27730 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g34140 LOC_Os02g33680 LOC_Os02g08440 LOC_Os04g34050 LOC_Os02g33600 LOC_Os02g45780 LOC_Os01g61080 LOC_Os03g44380 LOC_Os03g58010 LOC_Os01g50410 LOC_Os03g53020 More.. |
| Downstream Genes | LOC_Os06g41770 LOC_Os09g29310 LOC_Os09g37080 LOC_Os09g25760 LOC_Os06g09310 LOC_Os08g37660 LOC_Os11g09010 LOC_Os06g14030 LOC_Os06g44010 LOC_Os12g42280 LOC_Os10g41330 More.. |
| Reference | |
|---|---|
| PubMed | 15618416 17532485 19661718 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g27730.1 |
| Rice Genome Annotation | LOC_Os05g27730.1 |
| Ricechip | LOC_Os05g27730.1 |
| KEGG | osa:4338474 dosa:Os05t0343400-01 |
| Entrez-Gene | 4338474 |