RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g27870.1 View Network Show in Genome Browser |
| Other Names | Os05g0345400 |
| Description | expressed protein |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 16267416-16273970 Nucleotide Length: 3051 |
| Protein-coding | LOC_Os05g27870 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g13370 LOC_Os05g01310 LOC_Os02g10790 LOC_Os02g51810 LOC_Os02g40880 LOC_Os03g02680 LOC_Os03g01850 LOC_Os03g56800 LOC_Os03g17700 LOC_Os03g62680 LOC_Os02g46990 More.. |
| Downstream Genes | LOC_Os07g29360 LOC_Os07g27180 LOC_Os10g36250 LOC_Os06g23160 LOC_Os12g07720 LOC_Os11g20689 LOC_Os06g06090 LOC_Os05g48930 LOC_Os06g01630 LOC_Os10g22380 LOC_Os12g41250 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2919 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g27870.1 |
| Rice Genome Annotation | LOC_Os05g27870.1 |
| Ricechip | LOC_Os05g27870.1 |
| KEGG | osa:4338480 dosa:Os05t0345400-02 |
| Entrez-Gene | 4338480 |