RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g28180.3 View Network Show in Genome Browser |
| Other Names | Os05g0349200 |
| Description | AMP deaminase, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 16477623-16485544 Nucleotide Length: 996 |
| Protein-coding | LOC_Os05g28180 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009790 | embryo development | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005623 | cell | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g57290 LOC_Os03g56310 LOC_Os03g57210 LOC_Os02g53230 LOC_Os02g32690 LOC_Os03g49220 LOC_Os01g61810 LOC_Os01g42410 LOC_Os01g42380 LOC_Os01g24010 LOC_Os01g42350 More.. |
| Downstream Genes | LOC_Os08g25010 LOC_Os07g46630 LOC_Os12g40130 LOC_Os05g38820 LOC_Os12g39860 LOC_Os09g16380 LOC_Os08g09690 LOC_Os07g30150 LOC_Os09g30310 LOC_Os08g38780 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g28180.3 |
| Rice Genome Annotation | LOC_Os05g28180.3 |
| Ricechip | LOC_Os05g28180.3 |
| KEGG | osa:4338495 dosa:Os05t0349200-01 |
| Entrez-Gene | 4338495 |